Dynamical behaviour of coupled atom-cavity systems in the single excitation limit

We investigate the time evolution of the photon-detection probability at various output ports of an all-fiber coupled cavity-quantum-electrodynamics (cavity-QED) system. The setup consists of two atoms trapped separately in the field of two nanofiber cavities that are connected by a standard optical fiber. We find that the normal-mode picture captures well the main features of the dynamics. However, a more accurate description based on the diagonalization of a non-Hermitian Hamiltonian reveals the origin of small yet significant features in the spontaneous emission spectra.